| | |
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| | | import scipy |
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| | | import torch |
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| | | import sklearn |
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| | | import hdbscan |
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| | | import numpy as np |
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| | | |
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| | | from sklearn.cluster._kmeans import k_means |
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| | | from sklearn.cluster import HDBSCAN |
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| | | |
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| | | |
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| | | class SpectralCluster: |
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| | |
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| | | self.metric = metric |
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| | | |
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| | | def __call__(self, X): |
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| | | from umap.umap_ import UMAP |
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| | | import umap.umap_ as umap |
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| | | umap_X = umap.UMAP( |
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| | | n_neighbors=self.n_neighbors, |
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| | | min_dist=0.0, |
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| | | n_components=min(self.n_components, X.shape[0] - 2), |
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| | | metric=self.metric, |
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| | | ).fit_transform(X) |
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| | | labels = hdbscan.HDBSCAN( |
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| | | labels = HDBSCAN( |
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| | | min_samples=self.min_samples, |
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| | | min_cluster_size=self.min_cluster_size, |
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| | | allow_single_cluster=True).fit_predict(umap_X) |
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